Jonathon Crystal Profile Picture

Jonathon Crystal

  • jcrystal@indiana.edu
  • MSB2 224
  • (812) 856-2246
  • Home Website
  • Provost Professor
    Psychological and Brain Sciences
  • Interim Director
    Neuroscience

Field of study

  • Comparative Cognition, episodic memory, metacognition, time perception, circadian rhythms, learning and memory, disorders of memory (e.g., Alzheimer's)

Education

  • Ph.D., Brown University, 1997
  • Sc.M., Brown University, 1994
  • B.Sc., University of Toronto, 1992

Research interests

  • Research in my lab is focused on developing new animal models of cognition. One benefit of studying cognition in animals is that it may provide insight into impairments in cognition observed in people. Cognitive impairments in people are debilitating, and developing insight into the origins of such impairments offers a tool to improve the effectiveness of treatments. Significant obstacles nonetheless impede the development of animal models of disordered cognition. Although there is a long history of studying learning and memory in animals, these types of cognitive processes may not match those observed clinically (e.g., Alzheimer's disease features severe impairments in episodic memory). Thus, it is possible that drug-development programs may identify agents effective at the pre-clinical level that subsequently fail when translated to a clinical trial in people. Ultimately, the expansion of the suite of cognitive processes that may be modeled in animals may translate to improved therapies for debilitating memory impairments observed in humans. The long-range goal is to understand how animals process and remember events in time and provide a theoretical framework for understanding memory disorders.
  • Current projects in the lab focus on: Animal models of episodic memory. Episodic memory function in rats that carry genes associated with Alzheimer's disease.

Representative publications

Replay of episodic memories in the rat (2018)
Panoz-Brown, D., Iyer, V., Carey, L. M., Sluka, C. M., Rajic, G., Kestenman, J., Gentry, M., Brotheridge, S., Somekh, I., Corbin, H. E., Tucker, K. G., Almeida, B., Hex, S. B., Garcia, K. D., Hohmann, A. G., & Crystal, J. D.
Current Biology, 28 (10), 1628-1634

Vivid episodic memories in people have been characterized as the replay of multiple unique events in sequential order [1-3]. The hippocampus plays a critical role in episodic memories in both people and rodents [2, 4-6]. Although rats remember multiple unique episodes [7, 8], it is currently unknown if animals "replay" episodic memories. Therefore, we developed an animal model of episodic memory replay. Here, we show that rats can remember a trial-unique stream of multiple episodes and the order in which these events occurred by engaging hippocampal-dependent episodic memory replay. We document that rats rely on episodic memory replay to remember the order of events rather than relying on non-episodic memories. Replay of episodic memories survives a long retention-interval challenge and interference from the memory of other events, which documents that replay is part of long-term episodic memory. The chemogenetic activating drug clozapine N-oxide (CNO), but not vehicle, reversibly impairs episodic memory replay in rats previously injected bilaterally in the hippocampus with a recombinant viral vector containing an inhibitory designer receptor exclusively activated by a designer drug (DREADD; AAV8-hSyn-hM4Di-mCherry). By contrast, two non-episodic memory assessments are unaffected by CNO, showing selectivity of this hippocampal-dependent impairment. Our approach provides an animal model of episodic memory replay, a process by which the rat searches its representations in episodic memory in sequential order to find information. Our findings using rats suggest that the ability to replay a stream of episodic memories is quite old in the evolutionary timescale.

Rats remember items in context using episodic memory (2016)
Panoz-Brown, D., Corbin, H.E., Dalecki, S.J., Gentry, M., Brotheridge, S., Sluka, C.M., Wu, J.E., & Crystal, J.D.
Current Biology, 26 (20), 2821-2826

Vivid episodic memories in people have been characterized as the replay of unique events in sequential order [1-3]. Animal models of episodic memory have successfully documented episodic memory of a single event (e.g., [4-8]). However, a fundamental feature of episodic memory in people is that it involves multiple events, and notably, episodic memory impairments in human diseases are not limited to a single event. Critically, it is not known whether animals remember many unique events using episodic memory. Here, we show that rats remember many unique events and the contexts in which the events occurred using episodic memory. We used an olfactory memory assessment in which new (but not old) odors were rewarded using 32 items. Rats were presented with 16 odors in one context and the same odors in a second context. To attain high accuracy, the rats needed to remember item in context because each odor was rewarded as a new item in each context. The demands on item-in-context memory were varied by assessing memory with 2, 3, 5, or 15 unpredictable transitions between contexts, and item-in-context memory survived a 45 min retention interval challenge. When the memory of item in context was put in conflict with non-episodic familiarity cues, rats relied on item in context using episodic memory. Our findings suggest that rats remember multiple unique events and the contexts in which these events occurred using episodic memory and support the view that rats may be used to model fundamental aspects of human cognition.

Working Memory Systems in the Rat (2016)
Bratch, A., Kann, S., Cain, J.A., Wu, J.E., Rivera-Reyes, N., Dalecki, S., Arman, D., Dunn, A., Cooper, S., Corbin, H.E., Doyle, A.R., & Crystal, J.D.
Current Biology, 26 (3), 351-355

A fundamental feature of memory in humans is the ability to simultaneously work with multiple types of information using independent memory systems. Working memory is conceptualized as two independent memory systems under executive control [1, 2]. Although there is a long history of using the term "working memory" to describe short-term memory in animals, it is not known whether multiple, independent memory systems exist in nonhumans. Here, we used two established short-term memory approaches to test the hypothesis that spatial and olfactory memory operate as independent working memory resources in the rat. In the olfactory memory task, rats chose a novel odor from a gradually incrementing set of old odors [3]. In the spatial memory task, rats searched for a depleting food source at multiple locations [4]. We presented rats with information to hold in memory in one domain (e.g., olfactory) while adding a memory load in the other domain (e.g., spatial). Control conditions equated the retention interval delay without adding a second memory load. In a further experiment, we used proactive interference [5-7] in the spatial domain to compromise spatial memory and evaluated the impact of adding an olfactory memory load. Olfactory and spatial memory are resistant to interference from the addition of a memory load in the other domain. Our data suggest that olfactory and spatial memory draw on independent working memory systems in the rat.

Binding of episodic memories in the rat (2014)
Crystal, J. D., & Smith, A. E.
Current Biology, 24 (24), 2957-2961

People remember an event as a coherent scene. Memory of such an episode is thought to reflect binding of a fully integrated representation, rather than memory of unconnected features. However, it is not known whether rodents form bound representations. Here we show that rats remember episodes as bound representations. Rats were presented with multiple features of unique episodes at memory encoding: what (food flavor), where (maze location), source (self-generated food seeking—running to the food site—or experimenter-generated food seeking—placement by the experimenter at the food site), and context (spatial cues in the room where the event occurred). After a delay, the trial continued with a memory assessment in which one flavor replenished at the self-generated—but not at experimenter-generated—locations. We presented rats with multiple overlapping features, in rapid succession, to ensure that successful memory retrieval required them to disambiguate multiple study episodes (using two rooms). We found that binding is resistant to interference from highly similar episodes and survives long retention intervals (∼1 week). Our results suggest that multiple episodic memories are each structured as bound representations, which suggests that nonhumans represent episodic memories using a structure similar to that of people. This finding enhances the translational potential for utilizing animal models of episodic memory to explore the biological mechanisms of memory and validate therapeutic approaches for treating disorders of memory.

Practicing memory retrieval improves long-term retention in rats (2013)
Crystal, J.D., Ketzenberger, J.A., & Alford, W.T.
Current Biology, 23 R708-709

The view that the human mind is a repository of stored items dates at least to Aristotle and Plato and continues to dominate investigations of human memory. This view fits with our intuitions that we study information as the optimal method to store information in memory and that retrieval of information functions only to assess what information was previously stored. Yet modern research on human memory suggests that retrieving information during a test facilitates later memory of that information. Because human memory is intertwined with language, it is difficult to resist the conclusion that language is essential for this key aspect of human cognition. Here we show that practising memory retrieval improves long-term retention in a nonhuman species. We report evidence that rats' long-term memory performance is enhanced if they had previously retrieved specific items stored in memory.

Event-based prospective memory in the rat (2013)
Wilson, A.G., Pizzo, M.J., Crystal, J.D.
Current Biology, 23 (12), 1089-1093

People plan to act in the future when an appropriate event occurs, a capacity known as event-based prospective memory. Prospective memory involves forming a representation of a planned future action, subsequently inactivating the representation, and ultimately reactivating it at an appropriate point in the future. Recent studies suggest that monkeys, chimpanzees, and rats display elements of prospective memory, but it is uncertain if the full sequence (activation-inactivation-reactivation) that occurs in humans also occurs in nonhumans. Here, we asked if rats exhibit event-based prospective memory. Rats completed an ongoing temporal-discrimination task while waiting for a large meal. To promote the use of event-based prospective memory, we created an event (tone pulses) that provided information that the meal could be obtained soon. Event-based prospective memory was suggested by the dramatic decline in ongoing-task performance after the event, with excellent performance at other times. To document that the event initiated memory activation, we arranged for the event to occur at novel times. Finally, multiple, repeated presentations of the event on the same day demonstrate that rats inactivate and reactivate the memory representation in an on-demand, event-based fashion. Development of an animal model of prospective memory may be valuable to probe the biological underpinnings of memory disorders.

Source memory in the rat (2013)
Crystal, J.D., Alford, W.T., Zhou, W., & Hohmann, A.G.
Current Biology, 23 387-391

Source memory is a representation of the origin (source) of information. When source information is bound together, it makes a memory episodic, allowing us to differentiate one event from another. Here, we asked whether rats remember the source of encoded information. Rats foraged for distinctive flavors of food that replenished (or failed to replenish) at its recently encountered location according to a source-information rule. To predict replenishment, rats needed to remember where they had encountered a preferred food type (chocolate) with self-generated (walking along a runway encountering chocolate) or experimenter-generated (placement of the rat at the chocolate site by an experimenter) cues. Three lines of evidence implicate the presence of source memory. First, rats selectively adjusted revisits to the chocolate location based on source information, under conditions in which familiarity of events could not produce successful performance. Second, source memory was dissociated from location memory by different decay rates. Third, temporary inactivation of the CA3 region of the hippocampus with lidocaine selectively eliminated source memory, suggesting that source memory is dependent upon an intact hippocampus. Development of an animal model of source memory may be valuable to probe the biological underpinnings of memory disorders marked by impairments in source memory.

Rats answer an unexpected question after incidental encoding. (2012)
Zhou, W., Hohmann, A.G., & Crystal, J.D.
Current Biology, 22 1149-1153

A fundamental aspect of episodic memory is that retrieval of information can occur when encoding is incidental and memory assessment is unexpected. These features are difficult to model in animals because behavioral training likely gives rise to well-learned expectations about the sequence of events. Thus, the possibility remains that animals may solve an episodic memory test by using well-learned semantic rules without remembering the episode at memory assessment. Here we show that rats can answer an unexpected question after incidental encoding in a hippocampal-dependent manner, consistent with the use of episodic memory. Rats were initially trained to report about a recent event (food versus no food) and separately searched for food where there was no expectation of being asked about the presence of food. To test episodic memory, we gave rats the opportunity to incidentally encode the presence or absence of food and unexpectedly asked them to report about the recent event. Temporary inactivation of the CA3 region of the hippocampus with bilateral infusions of lidocaine selectively eliminated the ability of rats to answer the unexpected, but not the expected, question. Our studies suggest that rats remember an earlier episode after incidental encoding based upon hippocampal-dependent episodic memory.

Evidence for remembering when events occurred in a rodent model of episodic memory (2009)
Zhou W. & Crystal, J.D.
Proceedings of the National Academy of Sciences USA, 106 9525-9529

The content of episodic memory consists of representations of unique past events. Episodic memories are grounded in a temporal framework (i.e., we remember when an event occurred). It has recently been argued that episodic-like memory in rats is qualitatively different from human episodic memory because, rather than remembering when an earlier past event occurred, rats used the cue of how long ago it occurred. We asked, therefore, whether rats remember the time of day at which they encountered a distinctive event, in addition to what occurred and where it happened. Rats were tested in the morning and afternoon, on separate days. A distinctive flavor (chocolate) was replenished at a daily-unique location at only one of these times. The interval between first and second daily opportunities to eat (study and test, respectively) was constant. Rats adjusted their revisits to the chocolate location at different times of day by using time of day rather than the cue of how long ago an event occurred. Two lines of evidence suggest that rats remembered the time at which the distinctive event occurred. First, under conditions in which the time of test (but not time of study) was novel, rats immediately transferred their knowledge of the chocolate contingency to the new test time. Second, under conditions in which predictions for study and test times were put in conflict, rats again used study time. Our results suggest that, at the time of memory assessment, rats remember when a recent episode occurred, similar to human episodic memory.

Metacognition in the rat (2007)
Foote, A.L. & Crystal, J.D.
Current Biology, 17 551-555

The ability to reflect on one's own mental processes, termed metacognition, is a defining feature of human existence [1, 2]. Consequently, a fundamental question in comparative cognition is whether nonhuman animals have knowledge of their own cognitive states [3]. Recent evidence suggests that people and nonhuman primates [4, 5, 6, 7, 8] but not less “cognitively sophisticated” species [3, 9, 10] are capable of metacognition. Here, we demonstrate for the first time that rats are capable of metacognition—i.e., they know when they do not know the answer in a duration-discrimination test. Before taking the duration test, rats were given the opportunity to decline the test. On other trials, they were not given the option to decline the test. Accurate performance on the duration test yielded a large reward, whereas inaccurate performance resulted in no reward. Declining a test yielded a small but guaranteed reward. If rats possess knowledge regarding whether they know the answer to the test, they would be expected to decline most frequently on difficult tests and show lowest accuracy on difficult tests that cannot be declined [4]. Our data provide evidence for both predictions and suggest that a nonprimate has knowledge of its own cognitive state.

Episodic-like memory in the rat (2006)
Babb, S.J. & Crystal, J.D.
Current Biology, 16 1317-1321

A fundamental question in comparative cognition is whether animals remember unique, personal past experiences. It has long been argued that memories for specific events (referred to as episodic memory) are unique to humans. Recently, considerable evidence has accumulated to show that food-storing birds possess critical behavioral elements of episodic memory, referred to as episodic-like memory in acknowledgment of the fact that behavioral criteria do not assess subjective experiences. Here we show that rats have a detailed representation of remembered events and meet behavioral criteria for episodic-like memory. We provided rats with access to locations baited with distinctive (e.g., grape and raspberry) or nondistinctive (regular chow) flavors. Locations with a distinctive flavor replenished after a long but not a short delay, and locations with the nondistinctive flavor never replenished. One distinctive flavor was devalued after encoding its location by prefeeding that flavor (satiation) or by pairing it with lithium chloride (acquired taste aversion), while the other distinctive flavor was not devalued. The rats selectively decreased revisits to the devalued distinctive flavor but not to the nondevalued distinctive flavor. The present studies demonstrate that rats selectively encode the content of episodic-like memories.

Dissertation Committee Service

Dissertation Committee Service
Author Dissertation Title Committee
Tamara, Carolina Route Learning And Its Interaction With Visual Landmarks (May 2013) Timberlake, W. (chair), Crystal, J., Goldstone, R., Todd, P.
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